PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240068.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 577aa    MW: 63285.3 Da    PI: 8.156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240068.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.88.4e-18272321255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  XP_008240068.1 272 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 321
                     889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.0E-24267342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-19269341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-15272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-15272324No hitNo description
SMARTSM003531.5E-13276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKPTHDF LSLYSHPTAQ QDPRPPSQGG YLETHDFLQP LERMGKKCIA  60
KEETSVEIST AEKPASHAAA SAAAQPTSSV EHVLPGGIGT YTISHISYFN QRVPKPEGSP  120
VFTVTQAQAS STDRNVEEHS NCSSYTGSGF TLWEESALKN KGKTGKENLG ERPVGIVRGQ  180
WTSSERPAQS SSNNHRNCFS AQSSGQKNIS FMEMMKSAAK GSTQEDELDD EEEFVLKKET  240
STTTTTATTP YKGDLRVKVD VKSSDQKANT PRSKHSATEQ RRRSKINDRF QMLRELIPHS  300
DQKRDKASFL LEVIEYIQFL QEKVDKYEGS YQGWNPDPAK LMPWQRNNPK LRESYCDQSR  360
GMNGGSGTAL VFAAKFDEKT TSVSPSIPGS CAQNPVESDT STETTFKAMD HHPGITSKPM  420
PFPLSMQPNF FTPVGSGGAA VPQLPPRLPS DAENTSQHQS MLCHTVSRAT DGAAARDKLK  480
EQELTIEDGR INISSAYSQG LLNTLTQALQ NSGVDLSQAS ISVQIELGKR GNSRSPIPKS  540
VVKDNEILSS NQGKRHSRVA SGEDSEHAPK KLKTGRN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240068.10.0PREDICTED: transcription factor BIM1 isoform X1
SwissprotQ9LEZ31e-141BIM1_ARATH; Transcription factor BIM1
TrEMBLM5WEB40.0M5WEB4_PRUPE; Uncharacterized protein
STRINGPOPTR_0015s03550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-138bHLH family protein